Source code for methylprep.models.controls

# Lib
from enum import Enum, unique


[docs]@unique class ControlType(Enum): STAINING = 'STAINING' # NOT FOUND IN MOUSE MANIFEST EXTENSION = 'EXTENSION' HYBRIDIZATION = 'HYBRIDIZATION' TARGET_REMOVAL = 'TARGET REMOVAL' BISULFITE_CONVERSION_I = 'BISULFITE CONVERSION I' BISULFITE_CONVERSION_II = 'BISULFITE CONVERSION II' SPECIFICITY_I = 'SPECIFICITY I' SPECIFICITY_II = 'SPECIFICITY II' NON_POLYMORPHIC = 'NON-POLYMORPHIC' # changed from 'NON - POLYMORPHIC' on 2020-12-01 to match manifests NEGATIVE = 'NEGATIVE' RESTORATION = 'RESTORATION' NORM_A = 'NORM_A' NORM_C = 'NORM_C' NORM_G = 'NORM_G' NORM_T = 'NORM_T' @classmethod def normalization_green(cls): return ( cls.NORM_C.value, cls.NORM_G.value, ) @classmethod def normalization_red(cls): return ( cls.NORM_A.value, cls.NORM_T.value, )
class ControlProbe(): __slots__ = [ 'address', 'control_type', 'color', 'extended_type', ] def __init__(self, address, control_type, color, extended_type): self.address = address self.control_type = control_type self.color = color self.extended_type = extended_type